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This story was last updated on Oct. 20.

Scientific teams around the world have developed successful Covid-19 vaccines in incredibly short order. In a feat that even a couple of years ago would have seemed completely out of reach, vaccines to protect against the new disease were being used before the first anniversary of the disclosure that a new threat existed. This is truly extraordinary.

In the United States, three vaccines are available. Two — those from Moderna and Johnson & Johnson — have emergency use authorizations, which are green lights from the Food and Drug Administration to be put into use, even though they have not yet been fully licensed. In August 2021, the FDA gave full approval to the vaccine developed by the partnership of Pfizer and German manufacturer BioNTech for people 16 and older. This vaccine is used in younger teens under an EUA and is expected to be available for children five and older by the first week of November.

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The Pfizer shot first received emergency authorization in mid-December, followed closely by the one developed by Moderna with assistance from the National Institute of Allergy and Infectious Diseases.

In late February came a third. Janssen Pharmaceuticals, the vaccine division of Johnson & Johnson, secured an emergency use authorization for its one-dose vaccine. The vaccine was seen as a potential game-changer. It doesn’t require the fussy cold-chain needed to keep the Pfizer and Moderna vaccines from spoiling. It is cheaper, both on a per-dose basis and because only one dose is needed. Plus it was thought a one-and-done option might entice some people who couldn’t easily get two doses to roll up their sleeves.

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But since the J&J vaccine’s arrival on the scene there have been a number of challenges. A production snafu in the hands of a contract production company contaminated 15 million doses, which had to be destroyed. And in mid-April, the FDA and CDC recommended states pause use of the vaccine as they investigate whether the vaccine triggers a rare but serious side effect — the development of diffuse blood clots, even though the few individuals who developed the condition had low platelet levels.

What follows is a head-to-head comparison of the vaccines developed by Pfizer and BioNTech, by Moderna, and by J&J. This article will be updated as developments occur.

Vaccine types

The Pfizer and Moderna vaccines are made using messenger RNA, or mRNA, a technology that delivers a bit of genetic code to cells — in effect, a recipe to make the surface protein (known as spike) on the SARS-2 virus. The proteins made with the mRNA instructions activate the immune system, teaching it to see the spike protein as foreign and develop antibodies and other immunity weapons with which to fight it.

The J&J vaccine uses a different approach to instruct human cells to make the SARS-2 spike protein, which then triggers an immune response. It is what’s known as a viral vectored vaccine. A harmless adenovirus — from a large family of viruses, some of which cause common colds — has been engineered to carry the genetic code for the SARS-2 spike protein. Once the adenovirus enters cells, they use that code to make spike proteins.  J&J employed this same approach to make an Ebola vaccine that has been authorized for use by the European Medicines Agency.

Target population

The Pfizer vaccine has been approved for use for people aged 16 and older, though its EUA also extends to youths ages 12 to 15. Later this month, the FDA is expected to expand the age group covered by the EUA to include children aged five to 11.  Moderna’s vaccine has been cleared for use in people 18 and older, though the company has been testing its vaccine in 12- to 17-year-olds. J&J’s vaccine has been tested in people 18 and older, and that’s who it was authorized for. Until testing in children and younger teens is conducted, this vaccine won’t be available for use anyone under 18 years old either.

Vaccine efficacy

The Pfizer and Moderna vaccines displayed astonishing — and essentially equivalent — degrees of efficacy, at least in the early stages after vaccination.

The Pfizer vaccine showed efficacy of 95% at preventing symptomatic Covid infection after two doses. The vaccine appeared to be more or less equally protective across age groups and racial and ethnic groups.

The Moderna vaccine was 94.1% effective at preventing symptomatic Covid-19 after the second dose. The vaccine’s efficacy appeared to be slightly lower in people 65 and older, but during a presentation to the Food and Drug Administration’s advisory committee in December, the company explained that the numbers could have been influenced by the fact there were few cases in that age group in the trial. The vaccine appeared to be equally effective across different ethnic and racial groups.

But comparing the efficacy of those vaccines to the efficacy of Johnson & Johnson’s is challenging because of differences in the designs of the Phase 3 clinical tests — essentially the trials were testing for different outcomes. Pfizer’s and Moderna’s trials both tested for any symptomatic Covid infection. Pfizer started counting cases from seven days after receipt of the second dose of vaccine, while Moderna waited until day 14 to start counting cases.

J&J, by contrast, sought to determine whether one dose of its vaccine protected against moderate to severe Covid illness — defined as a combination of a positive test and at least one symptom such as shortness of breath, beginning from 14 or 28 days after the single shot. (The company collected data for both.)

Because of the difference in the trials, making direct comparisons is a bit like comparing apples and oranges. Additionally, Pfizer and Moderna’s vaccines were tested before the emergence of troubling new variants.

The J&J vaccine was still being tested when the variants were making the rounds. Much of the data generated in the South African arm of the J&J trial involved people who were infected with the variant first seen in South Africa, called Beta.

The J&J one-dose vaccine was shown to be 66% protective against moderate to severe Covid infections overall from 28 days after injection, though there was variability based on geographic locations. The vaccine was 72% protective in the United States, 66% protective in South America, and 57% protective in South Africa.

But the vaccine was shown to be 85% protective against severe disease, with no differences across the eight countries or three regions in the study, nor across age groups among trial participants. And there were no hospitalizations or deaths in the vaccine arm of the trial after the 28-day period in which immunity developed.

The vaccines all appear to have lost some efficacy against infection with the Delta variant, which became dominant in the United States in summer 2021 — though it’s not clear how much of the efficacy decline is due to the mutations of Delta or waning immunity as the months since initial vaccination accumulate.

It also appears that, while the vaccines are preventing many infections, vaccinated people who have breakthrough infections with the Delta variant can transmit the virus to others (though they are not as infectious as unvaccinated people). Still, even with Delta, studies indicate that the vaccines have maintained their protectiveness against severe disease and death.

Number of doses/amounts of vaccine per dose

The primary series of both the Moderna and the Pfizer vaccines is two shots: a priming dose, followed by a booster shot. The interval between Moderna doses is 28 days; for the Pfizer vaccine, it’s 21 days.

Each dose of Pfizer’s contains 30 micrograms of vaccine. Moderna went with a much larger dose of vaccine, 100 micrograms. It means the company is using a little more than three times as much vaccine per person as Pfizer is. While Moderna’s initial results didn’t seem to justify the much larger dose, data suggest the protection the company’s vaccine generates is declining at a slower rate than Pfizer’s is; some experts believe the higher dose may be at least partially responsible.

The J&J vaccine is, as mentioned, a single-dose vaccine. The company has also tested a two-dose regimen, with the two shots given 57 days apart. The results from that 30,000-person trial were presented during an Oct. 15 meeting of FDA’s Vaccines and Related Biological Products Advisory Committee, as part of its application for an EUA for its booster dose. (More on this next.)

Durability of protection

Concerns about waning immunity are driving a number of countries to offer their citizens booster shots, despite the fact that the director-general of the World Health Organization, Tedros Adhanom Ghebreyesus, called for a moratorium on giving vaccine boosters until 2022 in order to speed up first doses of vaccine to low-income countries.

What appears to be happening is that as more time passes after vaccination, protection against all Covid infections starts to decline. Breakthrough cases — which are mostly mild — have started to increase. The decline has been most pronounced among Pfizer recipients. Data from the large health system Kaiser Permanente of Southern California suggests the waning is most pronounced against the Delta variant — the main family of SARS-CoV-2 viruses circulating in the U.S. — but even against other variants protection has declined.

All three vaccines continue to offer solid protection against severe illness, though there is concern within the Biden administration that this too will weaken if boosters are not given.

A key question at this point is whether the booster shots will solidify protection in a way that is more sustained, or if these additional doses mark the start of a regular booster shot effort.

Booster status

For the purposes of this discussion, there are two sorts of boosters.

The first is boosters or third shots for people who are moderately to severely immunocompromised — because they are undergoing chemotherapy for cancer, because they have had an organ transplant and are on immunosuppressive therapy, or because they have advanced or untreated HIV. These were authorized in August by the FDA for the Pfizer-BioNTech and Moderna vaccines, because of growing evidence that immunocompromised people might not be protected by the standard vaccine regimen.

The policy did not apply to the one-dose J&J vaccine. It is unlikely many immunocompromised people would have opted for this vaccine.

The second type of booster is designed to top up protection from the initial shot, in the case of J&J, or series of shots, in the cases of Pfizer and Moderna. All three companies have received authorizations for booster shots from the FDA.

Pfizer was the first to file with the agency, and its booster was authorized in late September for people 65 and older, people 18 to 64 with medical conditions that raise their risk of severe Covid, and people aged 18 to 64 whose jobs or living arrangements put them at higher risk of severe Covid.

On Oct. 20, the FDA issued EUAs for Moderna and J&J’s boosters — and in the process, created a very interesting situation. (More on this in the next section.)

Unique among the companies, Moderna’s third shot contains half as much antigen as its first two. (This is not the case for people who are immunocompromised. Their third dose of Moderna is a full dose.) The emergency authorization states — and the Centers for Disease Control and Prevention’s vaccine advisory committee is likely to concur — that  the Moderna booster can be given to the same groups of people as the Pfizer booster.

The FDA’s statement also presages that the boosters will soon be made available to more people. Peter Marks, director of FDA’s Center for Biologics Evaluation and Research, has been publicly signalling the agency’s desire to lower the age for booster doses for all — with no restrictions related to medical conditions or employment sector — to 40 from 65.

Both the Pfizer and Moderna boosters are going to be available to people six months or longer after the second dose in the series.

Not so with the J&J booster. The company had wanted the booster to be given six months or more after the initial shot, except in rare circumstances. But FDA’s vaccine advisers rejected that idea, expressing concern about the level of protection people get from the single shot. They recommended that everyone who got the J&J vaccine should be vaccinated two months after the first dose — with a catchup period for people who are already further out from their first shot.

Mix and match boosters

It appears getting a booster shot may be a “choose your own adventure” type of experience after the FDA stipulated that people eligible for boosters can choose any of the jabs, regardless of what brand they initially received.

There is a growing body of evidence that boosting with a different vaccine could induce a broader and longer-lasting immune response — though some combinations may work better than others.

In announcing the emergency authorizations for the Moderna and J&J boosters, the FDA stated no preference for who gets what, or in what order. People who got J&J can get a second shot of Moderna (the half dose) or Pfizer. People who got one of the mRNA vaccines can get the J&J vaccine as their booster, the agency said.

Not stated in the FDA’s announcement is the fact that tThis new policy will make life much easier for folks delivering booster shots, especially those trying to boost people living in long-term care, homeless shelters or prisons. They will need to bring only one vaccine when they go to administer booster shots, rather than trying to match people to their original vaccination brand.

Side-effect profile

In the vernacular of vaccinology, shots that trigger a range of transient side effects in a lot of recipients are known as reactogenic.

All of these vaccines — in fact, most if not all the Covid-19 vaccines that have reported data so far — fall into the reactogenic category. The Advisory Committee on Immunization Practices, the CDC’s expert panel on vaccines, advised hospitals early in the rollout that they might want to stagger vaccinations among employees in case some feel too unwell to work the day after being vaccinated.

The most common side effects are injection site pain, fatigue, headache, muscle pain, and joint pain. Some people in the clinical trials have reported fever. With the Pfizer and Moderna vaccines, side effects are more common after the second dose. Younger adults, who have more robust immune systems, reported more side effects than older adults.

To be clear: These side effects are a sign of an immune system kicking into gear. They do not signal that the vaccine is unsafe. To date there are no serious, long-term side effects associated with receipt of these vaccines, which will be closely monitored as their use expands.

There have been reports of severe allergic reactions to the mRNA vaccines. Both the Pfizer and Moderna vaccines appear, on rare occasions, to trigger anaphylaxis, a severe and potentially life-threatening reaction. People who develop anaphylaxis must be treated with epinephrine — the drug in EpiPens — and may need to be hospitalized to ensure their airways remain open. The CDC says people should be monitored for 15 minutes after getting a Covid-19 shot, and 30 minutes if they have a history of severe allergies. J&J recently revealed that a single case of anaphylaxis has been reported in someone who received its vaccine.

It will take time to come up with a firm estimate of how frequently this side effect occurs. The most recent data from the CDC suggest that anaphylaxis occurs at a rate of about 2.5 cases per one million doses given of the Moderna vaccine, and 4.7 cases per million doses of the Pfizer. Many of the people who have developed anaphylaxis have a history of severe allergies and some have had previous episodes of anaphylaxis.

The mRNA vaccines carry a small risk of myocarditis and pericarditis, two types of heart inflammation that are most commonly seen soon after people receive their second shots, health officials have said. Men under 40 seem to be at highest risk, particularly those aged 12 to 17. Most cases reported have been mild and resolved.

The J&J also appears to have a serious — thought different — problem. A small number of individuals who received the vaccine have gone on to develop thrombotic events in the week or two after vaccination; one has died. The thrombotic events include diffuse clots and low platelet levels, an unusual combination that can be dangerous if treated improperly. The normal treatment for clots — a blood thinner called heparin — would make the problem worse, the FDA said, warning doctors to ask for a Covid-19 vaccination history if they see patients with that configuration of symptoms.

Safety for those who are pregnant, lactating, or planning a pregnancy

Early on in the Covid vaccine rollout, there were no data on which to determine if the vaccines were safe for people who are pregnant or lactating. But after several studies, experts have concluded the vaccines are safe during pregnancy and lactationand furthermore, they are important for these two groups to receive. This study in the New England Journal of Medicine, for instance, looked at the safety of Pfizer and Moderna vaccines in pregnant and lactating people.

The CDC and the American College of Obstetricians and Gynecologists advise that people who are pregnant or lactating should get vaccinated, because of the risk Covid infection poses to them.

There are a lot of rumors making the rounds that getting vaccinated against Covid will negatively impact a person’s ability to conceive a child. ESPN football reporter Allison Williams recently announced she was quitting the network — which has a vaccine mandate — because she wants to have another child.

There is no evidence that getting vaccinated against Covid threatens fertility. In fact, a study published last month compared pregnancy rates among patients undergoing in vitro fertilization, looking to see if there were differences among people who had been vaccinated, who had Covid antibodies from infection, or had neither. “The current study failed to identify the difference in the implantation or pregnancy rates between women with documented seropositivity to the spike protein and women without seropositivity,” the authors reported.

Storage requirements

The mRNA vaccines require an elaborate cold chain, the term used to describe the conditions under which vaccines must be stored during distribution and when they are in the doctors’ offices, pharmacies, or public health clinics where they’ll be administered.

The J&J shot does not, which means this vaccine can be given easily anywhere — in  doctors’ offices, pharmacies, mass vaccination sites, public health clinics — once supplies are adequate. It can be stored for at least three months at the temperature of a regular refrigerator.

Of the mRNA vaccines, Pfizer’s was originally the more difficult to use. It had to be shipped and stored in ultra-cold freezers — ones that could keep the vials at -94 degrees Fahrenheit. But recently, the FDA announced that the vaccine can be shipped and stored — for a two-week period only — at temperatures of normal pharmacy freezers, between -13 and 5 degrees Fahrenheit. That should make the final stage of the vaccine’s journey from production plant to syringe ready to plunge into an arm somewhat easier.

Moderna’s must be shipped at -4 degrees Fahrenheit, which is within the temperature of a regular refrigerator freezer.

After thawing, a vial of the Pfizer vaccine must be used within five days; Moderna’s is stable at fridge temperature for 30 days and at room temperature for 12 hours. J&J’s vaccine can be stored at room temperature — not to exceed 77 degrees Fahrenheit — for 12 hours when the vial hasn’t yet been punctured. After the first dose is withdrawn, the vial can be stored in a fridge for six hours or at room temperature for two hours.

Andrew Joseph contributed reporting. 

An earlier version of this story mischaracterized the way in which viral vectored vaccines work and incorrectly stated that the single dose J&J vaccine contains more antigen than the doses in its two-dose regimen. 

  • Per UK clinical trial data released last week, the Novavax vaccine is considered best in class. Any comparison on this vaccine versus the other?

  • I was given the first dose of the Pfizer vaccine on 31st January. What is the % protection that this will give me please? I am 77. I was told I will have to wait 12 weeks for the 2nd dose. Is this time too long for the necessary degree of protection? What is the % protection after the second dose please?

  • I was given the first dose of the Pfizer vaccine on 31st January. What is the % protection that this will give me please? I am 77. I was told I will have to wait 12 weeks for the 2nd dose. Is this time too long for the necessary degree of protection?

  • Pfizer has their vaccine manufactured in China. Oh the irony, They made a deal with the us government for millions of does that need to be stored a -80 degrees f at 10 times the price of others. ( someone is getting a kickback ) and you as a taxpayer will have to pay back the stimulus money that payed for it. Big Pharma, yes Pfizer cares…..about profits.

  • “It means the company is using a little more than three times as much vaccine per person as Pfizer is. And yet, they aren’t getting better results.” Because you only need so many neutralizing antibodies to do the job. And with Pfizer, you get that number. But you get a great deal more with Moderna. As well as more memory-T cells. And it just may be that this makes a difference in the longevity of immunity. Moderna tested 10mg, 25 mg, and 100 mg in their phase 1/2 trial and decided to go with 100. Pfizer tested 30mg, 100mg, and 250mg and decided to go with 30 because it produced a sufficient response and they felt there were too many side effects with 100mg and 250mg, which given that the side effects are all associated with the intensity of the immune response, makes sense.

    • I am going to get the moderns vaccine Feb 4th it is 100mg I pray it all goes well
      I will post after shot on Thursday and after second one God bless all please wear double mask Thank you please reply any questions after 4th

  • Thank you so much for keeping me so well-informed, in an easily comprehensible presentation.

  • I have now completed both doses of pfizer vaccine. Absolutely no side effects.
    I will continue to double mask.
    I will not be arrogant or feel privileged above any other.
    I will remove my masks only when all of us can unmask, together.
    Blessings and love to each reader.
    Prayers for the end of this terrible disease.

    • we all think you are wonderful… I would be more convinced of your virtue if you had decided to be vaccinated after all the elderly folks had received it…

  • Does the johnson&Johnson vaccine have sulpha in it i cannot take either of the first 2 vaccines because they both have sulpha drug in them that drug could kill me. Thanks for your help

    • Drug info on Pfizer, Moderna vaccine formulation.
      No mention of sulfa.

      WHAT ARE THE INGREDIENTS IN THE PFIZER-BIONTECH COVID-19 VACCINE? The Pfizer-BioNTech COVID-19 Vaccine includes the following ingredients: mRNA, lipids ((4-hydroxybutyl)azanediyl)bis(hexane-6,1-diyl)bis(2-hexyldecanoate), 2 [(polyethylene glycol)-2000]-N,N-ditetradecylacetamide, 1,2-Distearoyl-sn-glycero-3- phosphocholine, and cholesterol), potassium chloride, monobasic potassium phosphate, sodium chloride, dibasic sodium phosphate dihydrate, and sucrose.

      WHAT ARE THE INGREDIENTS IN THE MODERNA COVID-19 VACCINE? The Moderna COVID-19 Vaccine contains the following ingredients: messenger ribonucleic acid (mRNA), lipids (SM-102, polyethylene glycol [PEG] 2000 dimyristoyl glycerol [DMG], cholesterol, and 1,2-distearoyl-sn-glycero-3-phosphocholine [DSPC]), tromethamine, tromethamine hydrochloride, acetic acid, sodium acetate, and sucrose.

  • Why are those people who are given the Pfizer vaccine having to wait for 12 weeks when there is no evidence that this is acceptable. It is not the advice of Pfizer

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